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Bioconductor
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RaggedExperiment
Matrix-like representations of mutation and CN data
https://bioconductor.org/packages/RaggedExperiment
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Different order of rows depending on the type of assay extraction
#30
csoneson
closed
2 months ago
2
dimnames(x) <- value was not working as expected for RaggedExperiment
#29
yli110-stat697
closed
1 year ago
4
ASCAT to RaggedExperiment vignette
#28
Lydia-King
closed
1 year ago
2
assays usage and constructor
#27
drighelli
closed
3 years ago
10
add sparseMatrix support for compact and sparseAssay
#26
LiNk-NY
closed
3 years ago
0
High memory usage when using assay() on large RaggedExperiments
#25
biobenkj
opened
4 years ago
3
no method or default for coercing “SimpleGRangesList” to “CompressedGRangesList”
#24
biobenkj
closed
4 years ago
9
fix qreduceAssay qranges issue
#23
lgeistlinger
closed
5 years ago
0
Error in assay<- / assays<-
#22
lgeistlinger
closed
5 years ago
2
Error in colnames<-
#21
lgeistlinger
closed
5 years ago
4
qreduceAssay: inconsistency in simplifyReduce
#20
lgeistlinger
closed
5 years ago
3
qreduceSummarizedExperiment vs qreduceAssay argument names
#19
lwaldron
closed
6 years ago
3
Disentangling assays and rowData
#18
lgeistlinger
opened
6 years ago
8
Error in rowData annotation (that also affects colData)
#17
lgeistlinger
closed
6 years ago
3
Return GRanges for *Assay method
#16
LiNk-NY
closed
6 years ago
3
Error in as(background, class(mcol)) : no method or default for coercing “logical” to “factor”
#15
dietmarfdz
closed
6 years ago
5
remove RangedRaggedAssay coercion
#14
LiNk-NY
closed
6 years ago
1
Ragged experiment from a sliced multi-assay experiment contains unexpected columns
#13
jason-weirather
closed
7 years ago
5
Update vignette with new arguments
#12
LiNk-NY
closed
7 years ago
0
Add real data vignette and data object
#11
lwaldron
opened
7 years ago
2
qreduceAssay: simplifyReduce
#10
lgeistlinger
closed
7 years ago
1
summarization of individual calls/ranges across population
#9
lgeistlinger
closed
6 years ago
12
rowRanges with extra columns
#8
lgeistlinger
closed
7 years ago
1
clarify on man page of RaggedExperiment-package
#7
lgeistlinger
closed
7 years ago
0
colData<- is not supported
#6
lgeistlinger
closed
7 years ago
0
unclear documentation of qreduceAssay
#5
lwaldron
closed
7 years ago
4
Error: isTRUEorFALSE(na.rm) is not TRUE
#4
lwaldron
closed
7 years ago
4
length returns 1
#3
LiNk-NY
closed
6 years ago
4
How to extract GRanges?
#2
lwaldron
closed
7 years ago
2
dimname replacement method
#1
LiNk-NY
closed
7 years ago
0