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Bioconductor / Rsamtools

Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
https://bioconductor.org/packages/Rsamtools
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Rsamtools cannot handle csi index? #17

Open Mailinnia opened 3 years ago

Mailinnia commented 3 years ago

Hi,

I'm working with the barley genome which has chromosomes exceeding the 2^29 length limit for creating a bai index. I therefore need to make a csi index.

But Rsamtools seems not to be able to handle bam files that exceed this limit and it seems it cannot handle csi index.