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Bioconductor / Rsamtools

Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
https://bioconductor.org/packages/Rsamtools
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Support for CSI indexes #58

Open diego-rt opened 1 year ago

diego-rt commented 1 year ago

Any chance Rsamtools will support CSI indexes anytime soon?

We have a genome with multigigabase size chromosomes and many R packages cant support it ultimately because they rely on Rsamtools for index handling.