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Bioconductor
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Rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
https://bioconductor.org/packages/Rsamtools
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Rsamtools::pileup counts overlapping paired-end reads twice
#13
alkodsi
opened
5 years ago
5
Error with getSeq from opened fasta file (Rsamtools 2.0.2)
#12
farshadf
opened
5 years ago
7
CVE_2012_1461-1 FOUND
#11
mmahmoudian
closed
5 years ago
5
ERROR in scanBcfHeader [Reported to maintainer@bioconductor.org]
#10
lshep
closed
5 years ago
5
How to use Rsamtools to extracting reads map into single chromosome from BAM file
#9
Timothy-WANG
closed
5 years ago
2
Bug in scanTabix
#8
timoast
opened
5 years ago
4
scanTabix should return a stream
#7
romanzenka
closed
5 years ago
7
handle multiple calls to scanBam() on an open BamFile
#6
mtmorgan
opened
5 years ago
2
indexFa breaks FaFile object when using getSeq
#5
FelixErnst
closed
5 years ago
0
.bai files are not found when "bam" is part of the file path
#4
ericfournier2
opened
5 years ago
0
Rsamtools::seqinfo() with corrupt BamFile messes up R session
#3
kjohnsen
closed
6 years ago
11
Overhaul with new Samtools source code
#2
kjohnsen
closed
6 years ago
2
support BAMs with >65535 CIGAR operators
#1
lh3
closed
2 years ago
3
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