This is causing check failures for alabaster.matrix in BioC-devel. It must have triggered by a recent-ish change in SparseArray (or related packages) as my failing test was last modified in 2023.
Session information
```
R version 4.4.0 Patched (2024-05-20 r86569)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 22.04.5 LTS
Matrix products: default
BLAS: /home/luna/Software/R/R-4-4-branch/lib/libRblas.so
LAPACK: /home/luna/Software/R/R-4-4-branch/lib/libRlapack.so; LAPACK version 3.12.0
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
time zone: America/Los_Angeles
tzcode source: system (glibc)
attached base packages:
[1] stats4 stats graphics grDevices utils datasets methods
[8] base
other attached packages:
[1] SparseArray_1.5.44 S4Arrays_1.5.10 IRanges_2.39.2
[4] abind_1.4-8 S4Vectors_0.43.2 MatrixGenerics_1.17.0
[7] matrixStats_1.4.1 BiocGenerics_0.51.3 Matrix_1.7-0
loaded via a namespace (and not attached):
[1] zlibbioc_1.51.1 compiler_4.4.0 tools_4.4.0 XVector_0.45.0
[5] crayon_1.5.3 grid_4.4.0 lattice_0.22-6
```
This is causing check failures for alabaster.matrix in BioC-devel. It must have triggered by a recent-ish change in SparseArray (or related packages) as my failing test was last modified in 2023.
Session information
``` R version 4.4.0 Patched (2024-05-20 r86569) Platform: x86_64-pc-linux-gnu Running under: Ubuntu 22.04.5 LTS Matrix products: default BLAS: /home/luna/Software/R/R-4-4-branch/lib/libRblas.so LAPACK: /home/luna/Software/R/R-4-4-branch/lib/libRlapack.so; LAPACK version 3.12.0 locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C time zone: America/Los_Angeles tzcode source: system (glibc) attached base packages: [1] stats4 stats graphics grDevices utils datasets methods [8] base other attached packages: [1] SparseArray_1.5.44 S4Arrays_1.5.10 IRanges_2.39.2 [4] abind_1.4-8 S4Vectors_0.43.2 MatrixGenerics_1.17.0 [7] matrixStats_1.4.1 BiocGenerics_0.51.3 Matrix_1.7-0 loaded via a namespace (and not attached): [1] zlibbioc_1.51.1 compiler_4.4.0 tools_4.4.0 XVector_0.45.0 [5] crayon_1.5.3 grid_4.4.0 lattice_0.22-6 ```