Bioconductor / SummarizedExperiment

A container (S4 class) for matrix-like assays
https://bioconductor.org/packages/SummarizedExperiment
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package(s) not installed when version(s) same as or greater than current; use `force = TRUE` to re-install: 'SummarizedExperiment' #68

Open bakaufman opened 1 year ago

bakaufman commented 1 year ago

I get the error: Bioconductor version 3.16 (BiocManager 1.30.19), R 4.2.2 (2022-10-31) Warning message: package(s) not installed when version(s) same as or greater than current; use force = TRUE to re-install: 'SummarizedExperiment'

Using force = TRUE doesn't help.

sessionInfo() R version 4.2.2 (2022-10-31) Platform: aarch64-apple-darwin20 (64-bit) Running under: macOS Monterey 12.6.2

Matrix products: default LAPACK: /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libRlapack.dylib

locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages: [1] stats4 stats graphics grDevices utils datasets methods base

other attached packages: [1] Biobase_2.58.0 MatrixGenerics_1.10.0 matrixStats_0.63.0 Rsamtools_2.14.0 GenomicRanges_1.50.2 BiocParallel_1.32.5
[7] BiocManager_1.30.19 Biostrings_2.66.0 GenomeInfoDb_1.34.6 XVector_0.38.0 IRanges_2.32.0 S4Vectors_0.36.1
[13] BiocGenerics_0.44.0

loaded via a namespace (and not attached): [1] zlibbioc_1.44.0 lattice_0.20-45 tools_4.2.2 parallel_4.2.2 grid_4.2.2 crayon_1.5.2
[7] Matrix_1.5-3 GenomeInfoDbData_1.2.9 bitops_1.0-7 codetools_0.2-18 RCurl_1.98-1.9 compiler_4.2.2

valid() 'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for details

replacement repositories: CRAN: https://cran.rstudio.com/

[1] TRUE

Not sure what recommended next steps are. I am still pretty new to this.

Thanks!

LiNk-NY commented 1 year ago

Hi @bakaufman It means that you already have the latest version of SummarizedExperiment installed. What does

packageVersion("SummarizedExperiment")

give you?