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Bioconductor / basilisk.utils

Clone of the Bioconductor repository for the basilisk.utils package.
https://bioconductor.org/packages/devel/bioc/html/basilisk.utils.html
GNU General Public License v3.0
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should the selection of miniconda version be configurable? #4

Closed vjcitn closed 1 year ago

vjcitn commented 2 years ago

https://github.com/LTLA/basilisk.utils/blob/ea7cb0cf182e283ea397c2300dbbd086e6faa584/R/installConda.R#L97 hard codes it.

FWIW manually changing to the latest worked OK for an updated BiocSklearn installation.

LTLA commented 2 years ago

Not by the client package developer. basilisk only manages a single version of miniconda for a given installation. If it were to be configured, it would need to be managed at basilisk's level, probably via environment variables.

I recently thought about updating it to a newer version to support M1 macs, but this is likely to have ramifications for all basilisk clients. Some coordination with downstream packages would be required.

LTLA commented 1 year ago

FYI it seems that it can be configured via the BASILISK_MINICONDA_VERSION environment variable.