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Bioconductor / basilisk.utils

Clone of the Bioconductor repository for the basilisk.utils package.
https://bioconductor.org/packages/devel/bioc/html/basilisk.utils.html
GNU General Public License v3.0
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Add support for Linux ARM64/aarch64 #7

Closed martin-g closed 1 year ago

martin-g commented 1 year ago

There is an ongoing initiative to add support for Linux ARM64: https://stat.ethz.ch/pipermail/bioc-devel/2023-January/019398.html

Currently https://github.com/LTLA/basilisk and https://github.com/theislab/zellkonverter fail with: 

PREFIX=/home/biocbuild/.cache/R/basilisk/1.11.2/0
Unpacking payload ...
/home/biocbuild/.cache/R/basilisk/Miniconda3-py38_4.12.0-Linux-x86_64.sh: line 412: /home/biocbuild/.cache/R/basilisk/1.11.2/0/conda.exe: cannot execute binary file: Exec format error /home/biocbuild/.cache/R/basilisk/Miniconda3-py38_4.12.0-Linux-x86_64.sh: line 414: /home/biocbuild/.cache/R/basilisk/1.11.2/0/conda.exe: cannot execute binary file: Exec format error Quitting from lines 71-207 (motivation.Rmd)
Error: processing vignette 'motivation.Rmd' failed with diagnostics: conda installation failed with status code '1'
--- failed re-building 'motivation.Rmd'

Signed-off-by: Martin Tzvetanov Grigorov mgrigorov@apache.org

LTLA commented 1 year ago

Thanks, LGTM. I'll let it simmer in BioC-devel before attempting to move it to release.

martin-g commented 1 year ago

Thank you!