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Bioconductor / basilisk

Clone of the Bioconductor repository for the basilisk package.
https://bioconductor.org/packages/devel/bioc/html/basilisk.html
GNU General Public License v3.0
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choose python version #19

Closed karltayeb closed 1 year ago

karltayeb commented 1 year ago

Is there a way to specify a specific version of python for a Basilisk environemnt? BasiliskEnvironment doesn't seem to have an argument for this. I thought maybe I could specify python version in the packages argument but passing packages=c('python==3.8.3, ...) yields an error.

LTLA commented 1 year ago

Hm. basilisk should have pulled it out of your packages, see

https://github.com/LTLA/basilisk/blob/e5bc4babd9069bd8cc2741eafa5a8e0ac72ed018/R/setupBasiliskEnv.R#L82-L84

What's the error?

karltayeb commented 1 year ago

You're right, it seems to be working now. Not sure what I did wrong before.