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Bioconductor / bioc_docker

[DEPRECATED] Docker containers for Bioconductor
https://github.com/bioconductor/bioconductor_docker
Artistic License 2.0
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New protcore container #47

Closed lgatto closed 7 years ago

lgatto commented 7 years ago

I added a new protcore container as an intermediate before building all proteomics packages, as the later always times out.

@lshep - could you add it to the docker hub, or tell me how to do it. Thanks!

lshep commented 7 years ago

Is there a reason these extra packages couldn't have been added into the already existing mscore or protmetcore container?

lgatto commented 7 years ago

mscore contains a minimal set of manually curated mass spectrometry packages and protmetcore the packages common to proteomics and metabolomics biocViews. The extra packages are not relevant for metabolomics; I'm not sure it would be useful to bloat the metabolomics containers. @sneumann, what do you think?

lshep commented 7 years ago

I set up and am trying to build the devel version now. If that is successful I will work on the release version

lshep commented 7 years ago

The devel_protcore2 container has built successfully. I triggered a rebuild of the devel_proteomics2 since it is now its parent.
The release_protcore2 is queued for building when the devel_proteomics completes.

lgatto commented 7 years ago

Ok, great and thank! Unless already done, I will set up the proteomics container to use protcore. I am also going to add/change some packages in protcore to reflect the most downloaded packages.

lshep commented 6 years ago

The new containers are up on docker hub : bioconductor/devel_protcore2 and bioconductor/release_protcore2.