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Bioconductor / bioc_docker

[DEPRECATED] Docker containers for Bioconductor
https://github.com/bioconductor/bioconductor_docker
Artistic License 2.0
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release_proteomics #55

Closed lshep closed 5 years ago

lshep commented 6 years ago

ERROR building: https://hub.docker.com/r/bioconductor/release_proteomics2/builds/bjyehkw2iv86hvxsggafmkr/

It appears prot2D can not be installed because its CRAN dependency samr has been removed from CRAN. https://cran.r-project.org/web/packages/samr/index.html

Can the package list be updated to not include?

I have reached out to the prot2D package to report this issue.

lshep commented 5 years ago

Release proteomics continues to fail - now because of spliceSites - they are using rbamtools which is no longer available

lshep commented 5 years ago

https://cloud.docker.com/u/bioconductor/repository/registry-1.docker.io/bioconductor/release_proteomics2/builds/e3e05ff2-57a2-482c-a3d6-8838fc7401f4