Update release tag and fix R version in config.yml

Bioconductor / bioc_docker

[DEPRECATED] Docker containers for Bioconductor

https://github.com/bioconductor/bioconductor_docker

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Update release tag and fix R version in config.yml #85

Closed sneumann closed 5 years ago

sneumann commented 5 years ago

Hi, this is work in progress. In this PR, I can confirm successful local build for

bioconductor/release_protcore2                       latest              4a4835c5f602        8 minutes ago       6.33GB
bioconductor/release_cytometry2                      latest              1ffdfff888d5        25 minutes ago      2.4GB
bioconductor/release_protmetcore2                    latest              a68f5aa2d777        34 minutes ago      5.13GB
bioconductor/release_mscore2                         latest              606e34d6e4dc        About an hour ago   3.21GB
bioconductor/release_core2                           latest              c0e6199b1adc        7 hours ago         2.15GB
bioconductor/release_base2                           latest              14d166fcec55        8 hours ago         1.64GB

still working on release_proteomics2 and release_metabolomics2, and the devel_* don't build due to BiocVersion not yet being ready for R-devel (3.7.0), which will be adressed in https://github.com/Bioconductor/BiocVersion/pull/2 Yours, Steffen

sneumann commented 5 years ago

Ok, with all commits I can now confirm successful local build for all release_* containers:

bioconductor/release_proteomics2                     latest              e7f866d231a0        6 hours ago         9.39GB
bioconductor/release_metabolomics2                   latest              e22d7e83b6e6        6 hours ago         6.32GB
bioconductor/release_protcore2                       latest              4a4835c5f602        8 hours ago         6.33GB
bioconductor/release_cytometry2                      latest              1ffdfff888d5        8 hours ago         2.4GB
bioconductor/release_protmetcore2                    latest              a68f5aa2d777        8 hours ago         5.13GB
bioconductor/release_mscore2                         latest              606e34d6e4dc        9 hours ago         3.21GB
bioconductor/release_core2                           latest              c0e6199b1adc        15 hours ago        2.15GB
bioconductor/release_base2                           latest              14d166fcec55        15 hours ago        1.64GB

Yours, Steffen

sneumann commented 5 years ago

I can also confirm local builds (with the BiocVersion hack:

bioconductor/devel_protcore2                         latest              cf065197a143        7 hours ago         8.76GB
bioconductor/devel_metabolomics2                     latest              851500bec832        9 hours ago         8.72GB
bioconductor/devel_protmetcore2                      latest              96af73806af0        9 hours ago         7.58GB
bioconductor/devel_mscore2                           latest              0ff0ba512a3d        10 hours ago        5.66GB
bioconductor/devel_core2                             latest              71b1a1a1dd33        10 hours ago        4.61GB
bioconductor/devel_base2                             latest              af8794dc7a55        10 hours ago        4.1GB

In devel_cytometry2 and devel_proteomics2 there are a few failing packages, which need maintainer intervention during the next devel cycle.

lshep commented 5 years ago

Thanks for looking at this. I had planned to do it later this week. I'll confirm this and merge either later today or tomorrow.

sneumann commented 5 years ago

After understanding https://github.com/Bioconductor/BiocVersion/pull/2#issuecomment-489680639 I changed the version for the devel_* images. Yours, Steffen