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Bioconductor / bioconductor_docker

Docker Containers for Bioconductor
https://bioconductor.org/help/docker/
Artistic License 2.0
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R graphics engine version 14 is not supported by this version of RStudio #35

Open lgatto opened 3 years ago

lgatto commented 3 years ago

Describe the bug

R graphics engine version 14 is not supported by this version of RStudio. The Plots tab will be disabled until a newer version of RStudio is installed.

To Reproduce

Positive control: start a container with the latest release:

docker run -e PASSWORD=bioc -p 8787:8787 bioconductor/bioconductor_docker:RELEASE_3_13

theb run plot(1:10) in the console to generate a plot in the Plots tab.

However, this fails with devel:

docker run -e PASSWORD=bioc -p 8787:8787 bioconductor/bioconductor_docker:devel

plot(1:10) throws the warning above and produces the plot in Rplots.pdf instead than on screen.

Screenshots

2021-09-02-185853_1210x377_scrot

lgatto commented 3 years ago

See also this discussed on the Renkulab forum: https://renku.discourse.group/t/rstudio-version-too-old/393

bschilder commented 2 years ago

Was this addressed?

nturaga commented 2 years ago

Hi @lgatto and @bschilder No, i've not addressed this yet. It's an issue passed down from rocker/rstudio I belive.

bschilder commented 2 years ago

ah got it, thanks for clarifying @nturaga! I'll flag this with the rocker/rstudio team