Closed js2264 closed 1 year ago
PRs are certainly welcome! Thank you for catching that and finding a potential solution! We started forcing https last week.
I have slightly changed the solution, instead adding the -L
flag so that the curl request follows redirects. I believe this is a better long-term solution in case we ever redirect from bioconductor.org to somewhere else in the future (eg an object-store bucket)
Not sure whether PRs are welcome for this repo, feel free to close it if not.
The Dockerfile attempts to fetch
Renviron.bioc
hosted by Bioconductor, but it looks like unsecured HTTP links are not available anymore forbioconductor.org
domain.When in the
devel
docker container, this results in installation of system dependencies to fail when using this command (fromneurogenomics/rworkflows
):And more generally an invalid
Renviron.site
file: