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Bioconductor / workshop-contributions

Repository for managing contributions to workshop.bioconductor.org
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[AMSI BioInfoSummer 2024] Introduction to imaging-based spatial transcriptomics analysis #104

Open bioc-workshop-dev opened 2 days ago

bioc-workshop-dev commented 2 days ago

DO NOT INCLUDE REQUESTS IN THE FIRST COMMENT. PLEASE POST THIS TEMPLATE UNCHANGED THEN FOLLOW ITS INSTRUCTIONS IN A NEW COMMENT

General Notes

This repository serves as a mostly automated pipeline for deploying workshops to the Bioconductor Workshop.

Bot Commands

Issues in this repository are monitored to by a bot. All commands need to be written on the first line of the comment, in a single line.

Example Docker Request

/request
  id='tidybioc2023'
  title='Tidy Transcriptomics'
  description='For Single-Cell RNA Sequencing Analyses'
  section='Smorgasbord 2023'
  source='https://github.com/tidytranscriptomics-workshops/bioc2023_tidytranscriptomics'
  docker='ghcr.io/tidytranscriptomics-workshops/bioc2023_tidytranscriptomics:latest'

Note. The example /request is on multiple lines for readability.

Additional Workshop Information

Expected Number of Participants: 30

Workshop Date(s): December 03, 2024 - December 05, 2024

Workshop Start Time (approx.): 09:30

bioc-workshop-dev commented 2 days ago

READ ONLY: DO NOT EDIT ## /request id="amsi2024intro2spatial" title="Introduction to imaging-based spatial transcriptomics analysis" description="This workflow package shows how a basic analysis of spatial transcriptomics datasets is performed to gain biological insight" section="AMSI BioInfoSummer 2024" startfile="vignettes/workflow_spatial_xenium.Rmd" source="https://github.com/bhuvad/XeniumSpatialAnalysisWorkshop" docker=":" pkglist="" vignettes="vignettes/workflow_spatial_xenium.Rmd"