[bbcc23] Orchestrating Large-Scale Single-Cell Analysis with Bioconductor

[bioc-workshop-dev]

DO NOT INCLUDE REQUESTS IN THE FIRST COMMENT. PLEASE POST THIS TEMPLATE UNCHANGED THEN FOLLOW ITS INSTRUCTIONS IN A NEW COMMENT

General Notes

This repository serves as a mostly automated pipeline for deploying workshops to the Bioconductor Workshop.

Bot Commands

Issues in this repository are monitored to by a bot. All commands need to be written on the first line of the comment, in a single line.

Example Docker Request

/request
  id='tidybioc2023'
  title='Tidy Transcriptomics'
  description='For Single-Cell RNA Sequencing Analyses'
  section='Smorgasbord 2023'
  source='https://github.com/tidytranscriptomics-workshops/bioc2023_tidytranscriptomics'
  docker='ghcr.io/tidytranscriptomics-workshops/bioc2023_tidytranscriptomics:latest'

Note. The example /request is on multiple lines for readability.

[bioc-workshop-dev]

/request id="bbcc2023" title="Orchestrating Large-Scale Single-Cell Analysis with Bioconductor" description="This tutorial aims to provide a solid foundation in using Bioconductor tools for single-cell RNA-seq analysis by walking through various steps of typical workflows using example datasets" section="bbcc23" startfile="README.md" source="https://github.com/drighelli/BBCC.OSCA" docker="ghcr.io/drighelli/bbcc.osca:latest" pkglist="" vignettes=""

[almahmoud]

AUTO-GENERATED RESPONSE Your request has been received and has passed initial screening. :sparkles:

Below are the detected values:

id='bbcc2023'
title='Orchestrating Large-Scale Single-Cell Analysis with Bioconductor'
description='This tutorial aims to provide a solid foundation in using Bioconductor tools for single-cell RNA-seq analysis by walking through various steps of typical workflows using example datasets'
section='bbcc23'
source='https://github.com/drighelli/BBCC.OSCA'
docker='ghcr.io/drighelli/bbcc.osca:latest'
port='8787'
command='echo "setwd(\"/home/rstudio\"); setHook(\"rstudio.sessionInit\", function(newSession) { if (newSession) rstudioapi::filesPaneNavigate(getwd()) }, action = \"append\")" > /home/rstudio/.Rprofile; /init'
pkglist=''
vignettes=''

If these are as expected, no further action is needed at this time. Please wait for an admin's response. If any changes are needed, please re-run the /request action with desired values.

[LiNk-NY]

This was a test. Please ignore.