Open bioc-workshop-dev opened 1 month ago
My apologies, in addition to the packages above, may we also include the following packages? Thanks!
Banksy Seurat scater cowplot ggplot2 scuttle spatialLIBD ExperimentHub harmony, knitr, rmarkdown, pals, scran, testthat (>= 3.0.0), BiocStyle
Hi! Just saw the discussion on slack. Guess we will just do the demo locally on our laptops, but will be using the vignettes from our public git repo. Is there a way to give conference attendees installation instructions for the package before the workshop?
@vipulsinghal02 what slack discussion are you referring to? Do you still want it added to the platform? Also, is this a package demo?
Hi Alex,
My apologies for the lack of clarity. This is the discussion I was referring to.
Yes it is a package demo. I thought about it a bit more, and okay yes, lets add us to the platform. Using your cloud platform might be the easiest way after all.
Best, Vipul
/test id="banksy07252024" title="Package Demo: Banksy" description="Spatial transcriptomic clustering with BANKSY" section="BioC2024" startfile="vignettes/parameter-selection.Rmd" source="https://github.com/prabhakarlab/Banksy" docker="ghcr.io/bioconductor/bioconductor:3.19" pkglist="prabhakarlab/Banksy" vignettes="vignettes/*"
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/test id="banksy07252024" title="Package Demo: Banksy" description="Spatial transcriptomic clustering with BANKSY" section="BioC2024" startfile="vignettes/parameter-selection.Rmd" source="https://github.com/prabhakarlab/Banksy" docker="ghcr.io/bioconductor/bioconductor:3.19" pkglist="prabhakarlab/Banksy"
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/test id="banksy07252024" title="Package Demo: Banksy" description="Spatial transcriptomic clustering with BANKSY" section="BioC2024" startfile="vignettes/parameter-selection.Rmd" source="https://github.com/prabhakarlab/Banksy" docker="ghcr.io/bioconductor/bioconductor:3.19" pkglist="prabhakarlab/Banksy"
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/test id="banksy07252024" title="Package Demo: Banksy" description="Spatial transcriptomic clustering with BANKSY" section="BioC2024" startfile="vignettes/parameter-selection.Rmd" source="https://github.com/prabhakarlab/Banksy" docker="ghcr.io/bioconductor/bioconductor:3.19" pkglist="prabhakarlab/Banksy"
P.S. This workshop is having its image build correctly but failing on push. Can build manually if needed, but trying to fix it to push to Dockerhub if fails to GHCR.io
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Your request has been received but is currently failing its deployment on test.
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/test id="banksy07252024" title="Package Demo: Banksy" description="Spatial transcriptomic clustering with BANKSY" section="BioC2024" startfile="vignettes/parameter-selection.Rmd" source="https://github.com/prabhakarlab/Banksy" docker="ghcr.io/bioconductor/bioconductor:3.19" pkglist="prabhakarlab/Banksy"
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Your request has been received but is currently failing its deployment on test.
If the corresponding /request
command has passed with the same parameters, this is likely a bug.
P.S. This workshop is having its image build correctly but failing on push. Can build manually if needed, but trying to fix it to push to Dockerhub if fails to GHCR.io
Hmm okay. Will keep an eye out for when it’s ready. We will have a local presentation ready to project from our laptop just in case.
Thanks a lot!!
I'm not entirely sure why this one gave so much trouble with the automatic tooling compared to others, but will dig into it later. I've added it manually, please test it up on the platform.
Thanks a lot, Alex! Getting on the flight, so will have spotty internet for the next day or so, but will test it whenever I can.
Cheers, Vipul
DO NOT INCLUDE REQUESTS IN THE FIRST COMMENT. PLEASE POST THIS TEMPLATE UNCHANGED THEN FOLLOW ITS INSTRUCTIONS IN A NEW COMMENT
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Note. The example
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is on multiple lines for readability.Additional Workshop Information
Expected Number of Participants: 30
Workshop Date(s): July 25, 2024 - July 25, 2024
Workshop Start Time (approx.): 14:45