[BioC2024] Igniting full-length isoform and mutation analysis of single-cell RNA-seq data with FLAMES

[bioc-workshop-dev]

DO NOT INCLUDE REQUESTS IN THE FIRST COMMENT. PLEASE POST THIS TEMPLATE UNCHANGED THEN FOLLOW ITS INSTRUCTIONS IN A NEW COMMENT

General Notes

This repository serves as a mostly automated pipeline for deploying workshops to the Bioconductor Workshop.

Bot Commands

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Example Docker Request

/request
  id='tidybioc2023'
  title='Tidy Transcriptomics'
  description='For Single-Cell RNA Sequencing Analyses'
  section='Smorgasbord 2023'
  source='https://github.com/tidytranscriptomics-workshops/bioc2023_tidytranscriptomics'
  docker='ghcr.io/tidytranscriptomics-workshops/bioc2023_tidytranscriptomics:latest'

Note. The example /request is on multiple lines for readability.

Additional Workshop Information

Expected Number of Participants: 15

Workshop Date(s): July 26, 2024 - July 26, 2024

Workshop Start Time (approx.): 14:45

[bioc-workshop-dev]

READ ONLY: DO NOT EDIT ## /request id="FLAMES2024" title="Igniting full-length isoform and mutation analysis of single-cell RNA-seq data with FLAMES" description="R package that supports FLAMES workflow demo" section="BioC2024" startfile="README.md" source="https://github.com/ChangqingW/IgniteRNAseq" docker="ghcr.io/ChangqingW/IgniteRNAseq:" pkglist="" vignettes=""

[almahmoud]

/test id="flamesbioc2024" title="Package Demo: FLAMES" description="Igniting full-length isoform and mutation analysis of single-cell RNA-seq data with FLAMES" section="BioC2024" startfile="vignettes/FLAMESWorkflow.Rmd" source="https://github.com/ChangqingW/IgniteRNAseq" docker="ghcr.io/ChangqingW/IgniteRNAseq:latest"

[almahmoud]

AUTO-GENERATED RESPONSE Action Log Your request has failed preliminary checks. Please make sure a corresponding /request command passes.

[almahmoud]

AUTO-GENERATED RESPONSE Action Log Your request has been received but is currently failing its deployment on test. If the corresponding /request command has passed with the same parameters, this is likely a bug.

[almahmoud]

/test id="flamesbioc2024" title="Package Demo: FLAMES" description="Igniting full-length isoform and mutation analysis of single-cell RNA-seq data with FLAMES" section="BioC2024" startfile="vignettes/FLAMESWorkflow.Rmd" source="https://github.com/ChangqingW/IgniteRNAseq" docker="ghcr.io/changqingw/igniternaseq:latest"

[almahmoud]

AUTO-GENERATED RESPONSE Action Log Your request has passed initial checks and is being built and/or deployed to the test instance. Please wait further updates.

[almahmoud]

AUTO-GENERATED RESPONSE Action Log Your workshop has been successfully deployed to the test instance. :sparkles: Please test your workshop on the development instance and notify us via comment when you deem it ready for public consumption on the production instance.