Open bioc-workshop-dev opened 1 month ago
NanoMethViz
package to analyze methylation data generated by ONT long-read sequencing" section="Bioc2024" startfile="README.md" source="https://github.com/Shians/differential_methylation_workshop" docker="ghcr.io/shians/differential_methylation_workshop:latest:devel" pkglist="dmrseq,tidyverse,plyranges,NanoMethViz,dplyr,TxDb.Mmusculus.UCSC.mm10.knownGene, org.Mm.eg.db" vignettes="vignettes/workflow.rmd"/test id="bioc2024diffmeth" title="Package Demo: NanoMethViz" description: "Long-read methylation data analysis with NanoMethViz and Bioconductor" section="Bioc2024" source="https://github.com/Shians/differential_methylation_workshop" docker="ghcr.io/shians/differential_methylation_workshop:latest" startfile="vignettes/workflow.rmd"
AUTO-GENERATED RESPONSE Action Log Your request has passed initial checks and is being built and/or deployed to the test instance. Please wait further updates.
AUTO-GENERATED RESPONSE Action Log Your workshop has been successfully deployed to the test instance. :sparkles: Please test your workshop on the development instance and notify us via comment when you deem it ready for public consumption on the production instance.
/test id="bioc2024diffmeth" title="Package Demo: NanoMethViz" description: "Long-read methylation data analysis with NanoMethViz and Bioconductor" section="BioC2024" source="https://github.com/Shians/differential_methylation_workshop" docker="ghcr.io/shians/differential_methylation_workshop:latest" startfile="vignettes/workflow.rmd"
AUTO-GENERATED RESPONSE Action Log Your request has passed initial checks and is being built and/or deployed to the test instance. Please wait further updates.
AUTO-GENERATED RESPONSE Action Log Your workshop has been successfully deployed to the test instance. :sparkles: Please test your workshop on the development instance and notify us via comment when you deem it ready for public consumption on the production instance.
/test id="bioc2024diffmeth" title="Package Demo: NanoMethViz" description="Long-read methylation data analysis with NanoMethViz and Bioconductor" section="BioC2024" source="https://github.com/Shians/differential_methylation_workshop" docker="ghcr.io/shians/differential_methylation_workshop:latest" startfile="vignettes/workflow.rmd"
AUTO-GENERATED RESPONSE Action Log Your request has passed initial checks and is being built and/or deployed to the test instance. Please wait further updates.
AUTO-GENERATED RESPONSE Action Log Your workshop has been successfully deployed to the test instance. :sparkles: Please test your workshop on the development instance and notify us via comment when you deem it ready for public consumption on the production instance.
DO NOT INCLUDE REQUESTS IN THE FIRST COMMENT. PLEASE POST THIS TEMPLATE UNCHANGED THEN FOLLOW ITS INSTRUCTIONS IN A NEW COMMENT
General Notes
This repository serves as a mostly automated pipeline for deploying workshops to the Bioconductor Workshop.
Bot Commands
Issues in this repository are monitored to by a bot. All commands need to be written on the first line of the comment, in a single line.
Example Docker Request
Note. The example
/request
is on multiple lines for readability.Additional Workshop Information
Expected Number of Participants: 20
Workshop Date(s): July 23, 2024 - July 26, 2024
Workshop Start Time (approx.): 00:45