[Bioc2024] Long-read methylation data analysis with NanoMethViz and Bioconductor

[bioc-workshop-dev]

DO NOT INCLUDE REQUESTS IN THE FIRST COMMENT. PLEASE POST THIS TEMPLATE UNCHANGED THEN FOLLOW ITS INSTRUCTIONS IN A NEW COMMENT

General Notes

This repository serves as a mostly automated pipeline for deploying workshops to the Bioconductor Workshop.

Bot Commands

Issues in this repository are monitored to by a bot. All commands need to be written on the first line of the comment, in a single line.

Example Docker Request

/request
  id='tidybioc2023'
  title='Tidy Transcriptomics'
  description='For Single-Cell RNA Sequencing Analyses'
  section='Smorgasbord 2023'
  source='https://github.com/tidytranscriptomics-workshops/bioc2023_tidytranscriptomics'
  docker='ghcr.io/tidytranscriptomics-workshops/bioc2023_tidytranscriptomics:latest'

Note. The example /request is on multiple lines for readability.

Additional Workshop Information

Expected Number of Participants: 20

Workshop Date(s): July 23, 2024 - July 26, 2024

Workshop Start Time (approx.): 00:45

[bioc-workshop-dev]

READ ONLY: DO NOT EDIT ## /request id="DiffMethWorkshop" title="Long-read methylation data analysis with NanoMethViz and Bioconductor" description="In this workflow, we will demonstrate how to use the NanoMethViz package to analyze methylation data generated by ONT long-read sequencing" section="Bioc2024" startfile="README.md" source="https://github.com/Shians/differential_methylation_workshop" docker="ghcr.io/shians/differential_methylation_workshop:latest:devel" pkglist="dmrseq,tidyverse,plyranges,NanoMethViz,dplyr,TxDb.Mmusculus.UCSC.mm10.knownGene, org.Mm.eg.db" vignettes="vignettes/workflow.rmd"

[almahmoud]

/test id="bioc2024diffmeth" title="Package Demo: NanoMethViz" description: "Long-read methylation data analysis with NanoMethViz and Bioconductor" section="Bioc2024" source="https://github.com/Shians/differential_methylation_workshop" docker="ghcr.io/shians/differential_methylation_workshop:latest" startfile="vignettes/workflow.rmd"

[almahmoud]

AUTO-GENERATED RESPONSE Action Log Your request has passed initial checks and is being built and/or deployed to the test instance. Please wait further updates.

[almahmoud]

AUTO-GENERATED RESPONSE Action Log Your workshop has been successfully deployed to the test instance. :sparkles: Please test your workshop on the development instance and notify us via comment when you deem it ready for public consumption on the production instance.

[almahmoud]

/test id="bioc2024diffmeth" title="Package Demo: NanoMethViz" description: "Long-read methylation data analysis with NanoMethViz and Bioconductor" section="BioC2024" source="https://github.com/Shians/differential_methylation_workshop" docker="ghcr.io/shians/differential_methylation_workshop:latest" startfile="vignettes/workflow.rmd"

[almahmoud]

AUTO-GENERATED RESPONSE Action Log Your request has passed initial checks and is being built and/or deployed to the test instance. Please wait further updates.

[almahmoud]

AUTO-GENERATED RESPONSE Action Log Your workshop has been successfully deployed to the test instance. :sparkles: Please test your workshop on the development instance and notify us via comment when you deem it ready for public consumption on the production instance.

[almahmoud]

/test id="bioc2024diffmeth" title="Package Demo: NanoMethViz" description="Long-read methylation data analysis with NanoMethViz and Bioconductor" section="BioC2024" source="https://github.com/Shians/differential_methylation_workshop" docker="ghcr.io/shians/differential_methylation_workshop:latest" startfile="vignettes/workflow.rmd"

[almahmoud]

AUTO-GENERATED RESPONSE Action Log Your request has passed initial checks and is being built and/or deployed to the test instance. Please wait further updates.

[almahmoud]

AUTO-GENERATED RESPONSE Action Log Your workshop has been successfully deployed to the test instance. :sparkles: Please test your workshop on the development instance and notify us via comment when you deem it ready for public consumption on the production instance.