[Bioc2024] workshop for Bioc2024 on processing of ontologies of anatomy, cell lines, and so on

[bioc-workshop-dev]

DO NOT INCLUDE REQUESTS IN THE FIRST COMMENT. PLEASE POST THIS TEMPLATE UNCHANGED THEN FOLLOW ITS INSTRUCTIONS IN A NEW COMMENT

General Notes

This repository serves as a mostly automated pipeline for deploying workshops to the Bioconductor Workshop.

Bot Commands

Issues in this repository are monitored to by a bot. All commands need to be written on the first line of the comment, in a single line.

Example Docker Request

/request
  id='tidybioc2023'
  title='Tidy Transcriptomics'
  description='For Single-Cell RNA Sequencing Analyses'
  section='Smorgasbord 2023'
  source='https://github.com/tidytranscriptomics-workshops/bioc2023_tidytranscriptomics'
  docker='ghcr.io/tidytranscriptomics-workshops/bioc2023_tidytranscriptomics:latest'

Note. The example /request is on multiple lines for readability.

Additional Workshop Information

Expected Number of Participants: 6

Workshop Date(s): July 24, 2024 - July 26, 2024

Workshop Start Time (approx.): 14:00

[bioc-workshop-dev]

READ ONLY: DO NOT EDIT ## /request id="vjconto" title="workshop for Bioc2024 on processing of ontologies of anatomy, cell lines, and so on" description="Support harvesting of diverse bioinformatic ontologies, making particular use of the ontologyIndex package on CRAN" section="Bioc2024" startfile="README.md" source="https://github.com/vjcitn/ontoProcWS" docker="ghcr.io/vjcitn/ontoprocws:0.0.1" pkglist="vjcitn/ontoProc, reticulate, SingleCellExperiment, celldex, rmarkdown, AnnotationDbi, magick, igraph, graph, Rgraphviz" vignettes="vignettes/owlents.Rmd"

[almahmoud]

/test id="vjcontobioc2024" title="Package Demo: ontoProc" description="Support harvesting of diverse bioinformatic ontologies, making particular use of the ontologyIndex package on CRAN" section="Bioc2024" startfile="vignettes/owlents.Rmd" source="https://github.com/vjcitn/ontoProcWS" docker="ghcr.io/vjcitn/ontoprocws:0.0.1"

[almahmoud]

AUTO-GENERATED RESPONSE Action Log Your request has failed preliminary checks. Please make sure a corresponding /request command passes.

[almahmoud]

AUTO-GENERATED RESPONSE Action Log Your request has been received but is currently failing its deployment on test. If the corresponding /request command has passed with the same parameters, this is likely a bug.

[almahmoud]

/test id="vjcontobioc2024" title="Package Demo: ontoProc" description="Support harvesting of diverse bioinformatic ontologies, making particular use of the ontologyIndex package on CRAN" section="Bioc2024" startfile="vignettes/owlents.Rmd" source="https://github.com/vjcitn/ontoProcWS" docker="ghcr.io/vjcitn/ontoprocws:latest"

[almahmoud]

AUTO-GENERATED RESPONSE Action Log Your request has passed initial checks and is being built and/or deployed to the test instance. Please wait further updates.

[almahmoud]

AUTO-GENERATED RESPONSE Action Log Your workshop has been successfully deployed to the test instance. :sparkles: Please test your workshop on the development instance and notify us via comment when you deem it ready for public consumption on the production instance.