BiodataAnalysisGroup / BioHackathon

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Preprocess Dataset for Generative AI Models #51

Closed marinaEM closed 2 weeks ago

marinaEM commented 2 weeks ago

Contribution Guidelines

  1. Initial Setup

    • Clone the repository: git clone <repository_url>
  2. Update Local Content

    • Ensure you’re up to date with the development branch:
      git checkout devel
      git pull origin devel
  3. Create a New Branch

    • Create a descriptive branch for your work:
      git checkout -b <branch_name>
  4. Commit & Push Changes

    • Stage and commit your changes with clear messages:
      git add <file_name>
      git commit -m "Brief description of changes"
    • Push to GitHub:
      git push origin <branch_name>
  5. Create a Pull Request

    • Target the devel branch for merging.
    • Follow the PR template, review, and submit.
  6. Final Merge & Update

    • Once approved, merge your PR and delete your branch if desired.
    • Update your local repository:
      git checkout devel
      git pull origin devel

By following these steps, you contribute effectively and collaboratively.\n\n### Task: Preprocess dataset for Generative AI models\n- Description: Create a preprocessing script to convert dataset IDs into a common format, including metadata needed for each perturbation task and metric calculation.\n- Input: Dataset ID\n- Output: Common formatted dataset with metadata.\n\nTags: #python, #nextflow