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BiodataMiningGroup / quimbi

Quick exploration tool for multivariate bioimages
GNU General Public License v3.0
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unable to load h5 file #13

Closed kailaw138 closed 10 months ago

kailaw138 commented 10 months ago

Attempt 1:

I have installed set up a development server with node ver. 20.10.0 in windows, the demo txt data can be loaded, However, h5 data, neither the demo msi_5d_g3_r0_va_barley_101_peaks_karin.h5, nor other .h5 files processed with ProViM, could be loaded. The procedure as follow:

in running node (from Node.js command prompt), legacy OpenSSL provider is enabled, with set NODE_OPTIONS=--openssl-legacy-provider

then npm run start:dev

starts a node based webpack development server at localhost:8080

.txt data could be loaded .... but not h5 files

Attempt 2:

An alternative method is set up with xampp 8.2.12-0, with Apache started running

cmd to the dist/index.html, then php -S localhost:8000

http://localhost:8000 in browser, load

However, neither the .txt nor the .h5 demo data load

Please give me the instructions to make it work.

Many thanks.

annzu commented 10 months ago

QUIMBI cannot read h5 files, but uses its own file format, which consists of a .txt and pngs.
To convert the h5 file, please follow the instructions under "Data Creation" (https://github.com/BiodataMiningGroup/quimbi#data-creation). Then enter the .txt in QUIMBI to start the application.

kailaw138 commented 10 months ago

Thanks - problem solved.

The instructions would have been clearer if it also has a "Local Version (without Docker)" section.