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BiodiversityOntologies / bco

Biological Collections Ontology
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Add new terms for taxonomic association and related classes #78

Closed ramonawalls closed 7 years ago

ramonawalls commented 7 years ago

The ODP for this was devised at the PPO hackathon in Tucson in September 2016.

This will replace BCO:0000042.

TIP is a planned process that has as output a taxonomic association between a PCO:organismal entity and a DWC:taxon.

ramonawalls commented 7 years ago

Added new terms for taxonomic association (bco:0000084), to taxon (bco:0000085), and of organism (bco:0000086).

ramonawalls commented 7 years ago

Closed with 675f3ba .

ramonawalls commented 7 years ago

A few fixes:

  1. bco:0000084 should be labeled "identification association".
  2. add subclass relation 'identification association' 'to taxon' some 'Taxon'
ramonawalls commented 7 years ago

The relation bco:0000087 should be labeled 'member of taxon', and it should be a subproperty of 'member of'.

'Member of taxon' is a superproperty of the property chain: inverse ('of organism') o 'to taxon' This means that is an instance of identification assertion has of organism and to taxon relations specified to instances of organismal entity and Taxon, the instance of organismal entity will be inferred to be a member of the instance of Taxon.

ramonawalls commented 7 years ago

@robgur and @jdeck88 - Can you please check if you agree with these changes.

Most up to date version of BCO is at https://raw.githubusercontent.com/BiodiversityOntologies/bco/master/src/ontology/bco-edit.owl

robgur commented 7 years ago

I do think this makes sense, yes:

If an instance of identification assertion has 'of organism' and 'to taxon' relations specified to instances of 'organismal entity' and 'Taxon', the instance of organismal entity will be inferred to be a member of the instance of Taxon.

On Tue, Dec 13, 2016 at 6:05 PM, Ramona Walls notifications@github.com wrote:

@robgur https://github.com/robgur and @jdeck88 https://github.com/jdeck88 - Can you please check if you agree with these changes.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/BiodiversityOntologies/bco/issues/78#issuecomment-266890809, or mute the thread https://github.com/notifications/unsubscribe-auth/AAcc7Dkmy3Gyt7auDxFRd5d3KcrfzZOmks5rHyS_gaJpZM4LJf8v .

jdeck88 commented 7 years ago

looks good to me.

John

On Wed, Dec 14, 2016 at 4:42 AM, Rob notifications@github.com wrote:

I do think this makes sense, yes:

If an instance of identification assertion has 'of organism' and 'to taxon' relations specified to instances of 'organismal entity' and 'Taxon', the instance of organismal entity will be inferred to be a member of the instance of Taxon.

On Tue, Dec 13, 2016 at 6:05 PM, Ramona Walls notifications@github.com wrote:

@robgur https://github.com/robgur and @jdeck88 https://github.com/jdeck88 - Can you please check if you agree with these changes.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/BiodiversityOntologies/bco/issues/78#issuecomment- 266890809, or mute the thread https://github.com/notifications/unsubscribe-auth/ AAcc7Dkmy3Gyt7auDxFRd5d3KcrfzZOmks5rHyS_gaJpZM4LJf8v

.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/BiodiversityOntologies/bco/issues/78#issuecomment-267024448, or mute the thread https://github.com/notifications/unsubscribe-auth/ABGdxXRIjhSkPyDQ9dyWzhhgPaRJpi4aks5rH-RQgaJpZM4LJf8v .

-- John Deck (541) 914-4739

ramonawalls commented 7 years ago

Had to make 'member of taxon' a subproperty of part of, not member of, because has member (inverse of member of) is irreflexsive and causes reasoning problems.