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BiodiversityOntologies / bco

Biological Collections Ontology
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Incorrect Class PURLs have bco.owl embedded #94

Closed cmungall closed 4 years ago

cmungall commented 5 years ago

Working with @kaiiam we noticed there are some class PURLs that don't follow standard OBO syntax, I assume this is unintentional:

$ grep bco.owl/ target/triffo/src/ontology/mirror/bco.owl 
        <obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/bco.owl/BCO_0000075"/>
        <obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/bco.owl/BCO_0000075"/>
        <obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/bco.owl/BCO_0000075"/>
        <obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/bco.owl/BCO_0000075"/>
        <obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/bco.owl/BCO_0000075"/>
        <obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/bco.owl/BCO_0000075"/>
        <obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/bco.owl/BCO_0000075"/>
        <obo:IAO_0000231 rdf:resource="http://purl.obolibrary.org/obo/bco.owl/BCO_0000075"/>
    <!-- http://purl.obolibrary.org/obo/bco.owl/BCO_0000080 -->
    <owl:Class rdf:about="http://purl.obolibrary.org/obo/bco.owl/BCO_0000080">
    <!-- http://purl.obolibrary.org/obo/bco.owl/BCO_0000081 -->
    <owl:Class rdf:about="http://purl.obolibrary.org/obo/bco.owl/BCO_0000081">
    <!-- http://purl.obolibrary.org/obo/bco.owl/BCO_0000075 -->
    <owl:NamedIndividual rdf:about="http://purl.obolibrary.org/obo/bco.owl/BCO_0000075">
ramonawalls commented 5 years ago

There were a handful of terms that had the incorrect purl format. I thought they had all been deprecated long ago, but it looks like I missed some. Thanks. Will fix.

ramonawalls commented 4 years ago

Ironic that these are new terms that were added when I was fixing the ID format.

@robgur Heads up that two of the terms are archeobotanical specimen and zooarcheological specimen. I will have to replace those terms. The definitions and everything will stay the same, but the IDs will change from http://purl.obolibrary.org/obo/bco.owl/BCO_0000080 and http://purl.obolibrary.org/obo/bco.owl/BCO_0000081

to

http://purl.obolibrary.org/obo/BCO_0000080 and http://purl.obolibrary.org/obo/BCO_0000081.

ramonawalls commented 4 years ago

Fixed during commit fbacff71208ca0d65f689e47a7417f31f33fa0ff. For some reason, I called this issue 22 in the commit message.