crop with workflow processing only first ROI

BioimageAnalysisCoreWEHI / napari_lattice

Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for data from the Zeiss lattice lightsheet microscope.

https://bioimageanalysiscorewehi.github.io/napari_lattice/

GNU General Public License v3.0

12 stars 4 forks source link

crop with workflow processing only first ROI #66

Closed pr4deepr closed 1 month ago

pr4deepr commented 2 months ago

CLI:

When running Crop in CLI by passing an ROIlist as a zip file and specifying roi_subset in yaml-config, I can save multiple ROIs.

However, if I run this with a workflow, the workflow gets executed but only for the first ROI. Rest of the ROIs or crops do not get processed.

@multimeric

multimeric commented 2 months ago

So it happens when you enable workflow + crop in the CLI?

pr4deepr commented 2 months ago

Yes, crop on its own is fine.. The probl lem happens when I enable crop in the yaml config file