codon usage bias and growth rate

BioinfoHR / coRdon

Codon Usage Analysis and Prediction of Gene Expressivity

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codon usage bias and growth rate #1

Open sarabeier opened 5 years ago

sarabeier commented 5 years ago

Hi Anamaria, I would like to suggest you to incorporate also the work on codon usage bias and its linkage to growth rate in genomic/metagenomic data as introduced in Vieira-Silva & Rocha (https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1000808) into the coRdon package. This would include the parameters ΔENC'/ΔENC'a S/Sa, F, and d. Kind regards, Sara

maurijlozano commented 3 years ago

Helo Anamaria, I wanted to ask you how the CAI is calculated by coRdon because I'm getting different values with other programs using the same reference set. Additionally I'm getting values greater than 1 and that should not be possible. Thank's Mauricio

anamariaelek commented 3 years ago

See #8