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BioinfoMachineLearning / DIPS-Plus

The Enhanced Database of Interacting Protein Structures for Interface Prediction
https://zenodo.org/record/5134732
GNU General Public License v3.0
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about rsync #1

Closed XuBlack closed 3 years ago

XuBlack commented 3 years ago

When I use the commend rsync -rlpt -v -z --delete --port=33444 --include='*.gz' --include='*.xz' --include='*/' --exclude '*' rsync.rcsb.org::ftp_data/biounit/coordinates/divided/ project/datasets/DIPS/raw/pdb, it appears the error @ERROR: max connections (25) reached -- try again later rsync error: error starting client-server protocol (code 5) at main.c(1666) [Receiver=3.1.2]

Do you know how to solve this problem? Thanks!

amorehead commented 3 years ago

Hi, @XuBlack. Thank you for reaching out.

To see if the RCSB's server is down, I tried running the following command on my local machine. I am currently able to download PDB complexes using this URL as shown below (I canceled the command after letting it execute for a few seconds). To help you troubleshoot, are you using any kind of virtual private network (VPN) while you are trying to run the rsync command? Using something like that while hitting the RCSB's servers may cause a connectivity issue.

Another thing to consider is whether there were any kinds of hidden whitespace characters in the command you pasted to your terminal. This may also cause some weird issues with rsync.

rsync command:

rsync -rlpt -v -z --delete --port=33444 --include='.gz' --include='.xz' --include='/' --exclude '' \ rsync.rcsb.org::ftp_data/biounit/coordinates/divided/ project/datasets/DIPS/raw/pdb

Command output: image

XuBlack commented 3 years ago

Thanks for your reply.

I have succeed in running the command after restarting the rsync service.