BioinfoMachineLearning / DIPS-Plus

The Enhanced Database of Interacting Protein Structures for Interface Prediction
https://zenodo.org/record/5134732
GNU General Public License v3.0
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about fasta sequences #8

Closed XuBlack closed 2 years ago

XuBlack commented 2 years ago

When I run the command python3 project/datasets/builder/postprocess_pruned_pairs.py "$PROJDIR"/project/datasets/DB5/raw "$PROJDIR"/project/datasets/DB5/interim/pairs "$PROJDIR"/project/datasets/DB5/interim/external_feats "$PROJDIR"/project/datasets/DB5/final/raw --num_cpus 32 --source_type db5,

it occurs FileNotFoundError: [Errno 2] No such file or directory: '/opt/data/private/protein/DIPS-Plus/project/datasets/DB5/interim/external_feats/OF/work'.

It seems that the fasta file is missing. I couldn't find the codes about how to process fasta in your sharing. Is there some code missing on Guthub? Or I need to download it myself.

thanks.