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BioinfoMachineLearning / DeepInteract

A geometric deep learning pipeline for predicting protein interface contacts. (ICLR 2022)
https://zenodo.org/record/6671582
GNU General Public License v3.0
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About positive labels for each inter-chain residue pair #12

Closed terry-r123 closed 2 years ago

terry-r123 commented 2 years ago

Hi @amorehead,

I was wondering if the positive labels for the CASP and DB5 datasets are also determined by each inter-chain residue pair that are found within 6 ˚A?

Thanks!

amorehead commented 2 years ago

Hi, @terry-r123.

Yes, the positive labels for these datasets used the same labeling scheme, 6 Angstrom inter-chain inter-residue distances.

terry-r123 commented 2 years ago

Hi, @terry-r123.

Yes, the positive labels for these datasets used the same labeling scheme, 6 Angstrom inter-chain inter-residue distances.

Thanks!