what genetic databases did you use?

BioinfoMachineLearning / DeepInteract

A geometric deep learning pipeline for predicting protein interface contacts. (ICLR 2022)

https://zenodo.org/record/6671582

GNU General Public License v3.0

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what genetic databases did you use? #13

Closed onlyonewater closed 2 years ago

onlyonewater commented 2 years ago

Hi, for the DIPS-PLUS dataset, what genetic databases did you use when you generated the DIPS-PLUS dataset from the raw PDB file, and for the casp, and db5 datasets?

onlyonewater commented 2 years ago

@amorehead

amorehead commented 2 years ago

Hi, @onlyonewater. For sequence-based feature generation, we used the BFD database to build DIPS-Plus, CASP, and DB5.

onlyonewater commented 2 years ago

Ok, I get it, thanks!!!