aramanaccent
commented
1 year ago Hello, The code found in (https://github.com/BioinfoUNIBA/QEdit/tree/master/scripts/get_DE_events.py ) appears to account for editing read out on the antisense strand; however , the one provided in REDItools/accessory does not. Additionally, the script in REDItools/accessory/ doesn't account for some of the input arguments such as the gene_pos_file; whereas, the former script does. You may want to update! Thanks, Anu
Hello, Could you please confirm that get_de_events.py does not look at potential editing events on the antisense strand? (T->C) . I couldn't find where it considered this in the code, but I could have missed something. Thank you! Anu