Open phisanti opened 2 months ago
If it helps, I have found that if force the gb to have more than one chromosome via:
gb$assembly <- data.frame(chr = c("NC_008596.1", "test"), start = 0, end = 6988209)
It works without issue, but, non-surprisingly, it shows two chromosomes.
It is my first time using the D3GB library and I am trying to make a simple data browser with the genome for Mycobacterium smegmatis. I tried taking the data from different sources but I keep getting an error. Here is my code for the first attempt:
This code triggers the following error:
Then, I tried using a genebank file from https://www.ncbi.nlm.nih.gov/datasets/genome/?taxon=246196. This code looks like:
But got the same error:
I suspect the error might come from the fact that M. smegmatis only have one chromosome, but I am not sure. Any help will be highly appreciated.
Here is my session: