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Bioinformatics-Department-C-BIG / mofa_tutorial

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Obtain the temporal changes of the signature- how does it vary over time?? consider timeomics #19

Open eathieniti opened 6 months ago

eathieniti commented 6 months ago
  1. For each cluster separately obtain its signature
  2. At all time points
  3. Which markers have a temporal change monotonic with time??
  4. how to show this??
eathieniti commented 6 months ago

timeomics?

eathieniti commented 1 week ago

Cluster 1 - RNA

trajectory23_TRUE_RNA_13_15_20_24_28time_and_sigcluster_1

Run also pathways

eathieniti commented 1 week ago

i UPDATED THE wilcox test to PAIRED and that makes a difference - I get many more genes.

Also I now get some proteins..... but needs further work to be done