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Bioinformatics-Department-C-BIG / mofa_tutorial

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Investigate: Why are the expressions of some pathways negative in baseline and then poisitive? #37

Open eathieniti opened 3 months ago

eathieniti commented 3 months ago
  1. Check if this is the cas and for which pathways and genes
  2. Check the age: DO NOT CORRECT OR
  3. Correct with age:cohort interaction
eathieniti commented 3 months ago

rnas_BPlog2FCcl1_2_3_hp_15 image

eathieniti commented 3 months ago

Findings:

  1. some genes are negative, then positive --> they might not be DE or statistially significatnt before, hw to deal with this..?
  2. find out which ones are DE, plot snapshots of networks only for DE molecules, and subset by pathways?