avrajit
commented
3 years ago Well, I understand , ... there is no getProjectSummary function in package but the help file is showing it is there. I pulled out all the available functions with TCGAbiolinks with
ls("package:TCGAbiolinks") and not found such function. A more close or replacement may be getDataCategorySummary
There is no function called
getProjectSummaryI'm unable to get any such command. My session info below. Any suggestion? R version 4.0.2 (2020-06-22) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 7 x64 (build 7601) Service Pack 1Matrix products: default
locale: [1] LC_COLLATE=English_India.1252 LC_CTYPE=English_India.1252 LC_MONETARY=English_India.1252 LC_NUMERIC=C LC_TIME=English_India.1252
attached base packages: [1] stats graphics grDevices utils datasets methods base
other attached packages: [1] TCGAbiolinks_2.16.4
loaded via a namespace (and not attached): [1] Rcpp_1.0.5 lattice_0.20-41 tidyr_1.1.0 prettyunits_1.1.1 assertthat_0.2.1
[6] digest_0.6.25 BiocFileCache_1.12.1 plyr_1.8.6 R6_2.4.1 GenomeInfoDb_1.24.2
[11] stats4_4.0.2 RSQLite_2.2.0 httr_1.4.2 ggplot2_3.3.2 pillar_1.4.6
[16] zlibbioc_1.34.0 rlang_0.4.8 progress_1.2.2 curl_4.3 data.table_1.13.2
[21] rstudioapi_0.11 blob_1.2.1 S4Vectors_0.26.1 R.utils_2.9.2 R.oo_1.23.0
[26] Matrix_1.2-18 downloader_0.4 readr_1.3.1 stringr_1.4.0 RCurl_1.98-1.2
[31] bit_1.1-15.2 biomaRt_2.44.4 munsell_0.5.0 tinytex_0.24 DelayedArray_0.14.1
[36] compiler_4.0.2 xfun_0.15 pkgconfig_2.0.3 askpass_1.1 BiocGenerics_0.34.0
[41] openssl_1.4.3 tidyselect_1.1.0 SummarizedExperiment_1.18.2 tibble_3.0.3 GenomeInfoDbData_1.2.3
[46] IRanges_2.22.2 matrixStats_0.57.0 XML_3.99-0.4 dbplyr_1.4.4 crayon_1.3.4
[51] dplyr_1.0.2 rappdirs_0.3.1 bitops_1.0-6 R.methodsS3_1.8.0 grid_4.0.2
[56] jsonlite_1.7.1 gtable_0.3.0 lifecycle_0.2.0 DBI_1.1.0 magrittr_1.5
[61] scales_1.1.1 stringi_1.4.6 XVector_0.28.0 xml2_1.3.2 ellipsis_0.3.1
[66] generics_0.1.0 vctrs_0.3.4 tools_4.0.2 bit64_0.9-7 Biobase_2.48.0
[71] glue_1.4.2 purrr_0.3.4 hms_0.5.3 parallel_4.0.2 AnnotationDbi_1.50.3
[76] colorspace_1.4-1 BiocManager_1.30.10 GenomicRanges_1.40.0 rvest_0.3.5 memoise_1.1.0