BioinformaticsFMRP / TCGAbiolinks

TCGAbiolinks
http://bioconductor.org/packages/devel/bioc/vignettes/TCGAbiolinks/inst/doc/index.html
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GDC server down, try to use this package later #473

Closed boseb closed 3 years ago

boseb commented 3 years ago

Hi, I am trying to download TCGA data but having error "Error in value[3L] : GDC server down, try to use this package later"

Gene_Quantification.query <- GDCquery(project = "TCGA-LUAD", data.category = "Transcriptome Profiling", data.type = "Gene Expression Quantification", workflow.type = "HTSeq - Counts")

Please help. ─ Session info ──────────────────────────────────────────────────────────────────────────────────────────────── setting value
version R version 4.0.3 (2020-10-10)
os Red Hat Enterprise Linux Server 7.5 (Maipo) system x86_64, linux-gnu
ui RStudio
language (EN)
collate en_US.UTF-8
ctype en_US.UTF-8
tz America/Chicago
date 2021-09-11

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[1] /home/bbj5535/R/x86_64-pc-linux-gnu-library/4.0 [2] /hpc/software/R/4.0.3/lib64/R/library [3] /projects/b1137/R/x86_64-pc-linux-gnu-library/4.0

V ── Loaded and on-disk version mismatch.

boseb commented 3 years ago

Got fixed. Closing the issue.