search

BioinformaticsFMRP / TCGAbiolinks

TCGAbiolinks
http://bioconductor.org/packages/devel/bioc/vignettes/TCGAbiolinks/inst/doc/index.html
289 stars 110 forks source link

can not get msi data of OV #487

Open asmlgkj opened 2 years ago

asmlgkj commented 2 years ago

Thanks a lot for building such a comprehensive and powerful tool. I want to get some MSI data of tcga data, here is ov for test, can you help me ? image

tiagochst commented 2 years ago

It does not look like there is MSI data dor TCGA-OV in GDC.

Screen Shot 2022-02-14 at 3 50 35 PM
asmlgkj commented 2 years ago

thanks a lot. i do not know how to know whether there is msi ov not in your picture

tiagochst commented 2 years ago

On the Project filter, there is no TCGA-OV project. These auxiliary files contain the MSI information.

asmlgkj commented 2 years ago

how you get into this, I do not know, can you help me