Issue with Tidyverse package

[BAREJAA]

When I run this -

library(tidyverse) library(TCGAbiolinks) library(DESeq2)

query <- GDCquery( project = "TCGA-LAML", data.category = "Transcriptome Profiling", data.type = "Gene Expression Quantification", workflow.type = "STAR - Counts" ) # for all options, refer to - https://portal.gdc.cancer.gov/repository

GDCdownload(query, method = "api") rnaseq <- GDCprepare(query)

I get this error - Error in fn(): ! Join columns must be present in data. x Problem with#gene.

But if I don't have Tidyverse loaded, everything works!

[tiagochst]

@BAREJAA Which version is the package? I was not able to replicate it on my side with the latest version.

[BAREJAA]

tidyverse version - 1.3.1 dplyr version - 1.0.8

I think these are the most recent versions

Thanks for taking a look!

[tiagochst]

I have the same versions. Which operational system ? Your TCGAbiolinks is also 2.23.9 ?

On Wed, Apr 6, 2022 at 6:10 PM Akshay Bareja @.***> wrote:

tidyverse version - 1.3.1 dplyr version - 1.0.8

I think these are the most recent versions

Thanks for taking a look!

— Reply to this email directly, view it on GitHub https://github.com/BioinformaticsFMRP/TCGAbiolinks/issues/497#issuecomment-1090863008, or unsubscribe https://github.com/notifications/unsubscribe-auth/AABDQ6OSVDY47HBQ7VYYPI3VDYDTNANCNFSM5SQT5EDQ . You are receiving this because you commented.Message ID: @.***>

[BAREJAA]

I thought it was, but I was using 2.23.8. Updating this package fixed my problem.

Thanks again!