Error in names(y) <- 1:length(y) : in STAR-counts

[aysenuroner]

I'm trying to normalize AML data with STAR counts but I got error message in the following:

normalization of genes

dataNorm <- TCGAanalyze_Normalization(tabDF = tcga_data, geneInfo=TCGAbiolinks::geneInfo)

Need about 0 seconds for this Complete Normalization Upper Quantile [Processing 80k elements /s]
Step 1 of 4: newSeqExpressionSet ... Step 2 of 4: withinLaneNormalization ... Error in names(y) <- 1:length(y) : 'names' attribute [2] must be the same length as the vector [0] Timing stopped at: 0.003 0 0.003

I also tried the geneInfoHT but it also ended up with the same error. Could you help me with that, please?

[tiagochst]

I believe @torongs82 Iadded the gene information for hg38 in another object.

dataNorm <- TCGAanalyze_Normalization(
    tabDF = dataPrep,
    geneInfo = geneInfoHT,
    method = "gcContent"
)                

[aysenuroner]

Still I'm getting the same error

[tiagochst]

Please, do you have the latest version (2.25.0) installed?

BiocManager::install("BioinformaticsFMRP/TCGAbiolinksGUI.data")
BiocManager::install("BioinformaticsFMRP/TCGAbiolinks")