tcgabiolinks Error: Resource temporarily unavailable

[sanazmo]

Hello I got an error when I tried running the command "tcga_data = GDCprepare(query_TCGA) " , after I downloaded GDC data. this error is: |28.50123% ~3 m remaining Error: Resource temporarily unavailable In addition: There were 50 or more warnings (use warnings() to see the first 50) Killed after 1 m . when I repeat this command, the error is: Error in value[3L] : GDC server down, try to use this package later. but the GDC server is ok. I do not know how to fix it! could somebody help me? thanks

[tiagochst]

Hi, Please, could you provide all the code, specially GDCquery.

Also, do you have the latest version of TCGAbiolinks (2.23.9)? If not do you mind updating it with

BiocManager::install("BioinformaticsFMRP/TCGAbiolinksGUI.data")
BiocManager::install("BioinformaticsFMRP/TCGAbiolinks")

Best regards,

[sanazmo]

thank you for your answer, I fixed this error, but I got a new error with running the GDC prepare. it is: > tcga_data = GDCprepare(query_TCGA) |========================================================|100% Completed after 46 m Error in stop_subscript(): ! Can't subset columns that don't exist. x Locations 2, 3, and 4 don't exist. i There are only 1 column. Run rlang::last_error() to see where the error occurred. There were 50 or more warnings (use warnings() to see the first 50) How can I solve this error? thanks