How to get VAF from open-acess TCGA somatic mutation file

BioinformaticsFMRP / TCGAbiolinks

TCGAbiolinks

http://bioconductor.org/packages/devel/bioc/vignettes/TCGAbiolinks/inst/doc/index.html

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How to get VAF from open-acess TCGA somatic mutation file #514

Open WarrenSu2022 opened 2 years ago

WarrenSu2022 commented 2 years ago

Hello! I am wondering how to download and integrate TCGA somatic mutation file with Variant Allel Fraction (VAF) for MATH value calculation. Any help will be appreciated.