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TCGAbiolinks
http://bioconductor.org/packages/devel/bioc/vignettes/TCGAbiolinks/inst/doc/index.html
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Update TCGAbiolinks handle new projects
#521
Open
tiagochst
opened
2 years ago
tiagochst
commented
2 years ago
https://rpubs.com/tiagochst/TCGAbiolinks_testing_new_projects
[X] BEATAML1.0-COHORT
[X] BEATAML1.0-CRENOLANIB
[X] CGCI-BLGSP
[ ] CGCI-HTMCP-CC
[ ] CMI-ASC
[ ] CMI-MBC
[ ] CMI-MPC
[ ] CPTAC-2
[X] CPTAC-3
[ ] CTSP-DLBCL1
[ ] EXCEPTIONAL_RESPONDERS-ER
[X] FM-AD
[ ] GENIE-DFCI
[ ] GENIE-GRCC
[ ] GENIE-JHU
[ ] GENIE-MDA
[ ] GENIE-MSK
[ ] GENIE-NKI
[ ] GENIE-UHN
[ ] GENIE-VICC
[X] HCMI-CMDC
[X] MMRF-COMMPASS
[ ] MP2PRT-WT
[X] NCICCR-DLBCL
[ ] OHSU-CNL
[X] ORGANOID-PANCREATIC
[ ] REBC-THYR
[X] TARGET-ALL-P1
[X] TARGET-ALL-P2
[X] TARGET-ALL-P3
[X] TARGET-AML
[X] TARGET-CCSK
[X] TARGET-NBL
[X] TARGET-OS
[X] TARGET-RT
[X] TARGET-WT
[X] TCGA-ACC
[X] TCGA-BLCA
[X] TCGA-BRCA
[X] TCGA-CESC
[X] TCGA-CHOL
[X] TCGA-COAD
[X] TCGA-DLBC
[X] TCGA-ESCA
[X] TCGA-GBM
[X] TCGA-HNSC
[X] TCGA-KICH
[X] TCGA-KIRC
[X] TCGA-KIRP
[X] TCGA-LAML
[X] TCGA-LGG
[X] TCGA-LIHC
[X] TCGA-LUAD
[X] TCGA-LUSC
[X] TCGA-MESO
[X] TCGA-OV
[X] TCGA-PAAD
[X] TCGA-PCPG
[X] TCGA-PRAD
[X] TCGA-READ
[X] TCGA-SARC
[X] TCGA-SKCM
[X] TCGA-STAD
[X] TCGA-TGCT
[X] TCGA-THCA
[X] TCGA-THYM
[X] TCGA-UCEC
[X] TCGA-UCS
[X] TCGA-UVM
[ ] TRIO-CRU
[X] VAREPOP-APOLLO
[ ] WCDT-MCRPC
https://rpubs.com/tiagochst/TCGAbiolinks_testing_new_projects