Closed tetomonti closed 1 year ago
Hi,
It looks like your package is outdated. Please, update it with the following command:
BiocManager::install("BioinformaticsFMRP/TCGAbiolinks")
Thank you, it worked!
Perhaps worth updating the Bioconductor page: searching for TCGAbiolinks sends you here: https://bioconductor.org/packages/release/bioc/html/TCGAbiolinks.html https://bioconductor.org/packages/release/bioc/html/TCGAbiolinks.html
Thanks
On Sep 19, 2022, at 11:09 PM, Tiago Chedraoui Silva @.***> wrote:
Hi,
It looks like your package is outdated. Please, update it with the following command: BiocManager::install("BioinformaticsFMRP/TCGAbiolinks")
— Reply to this email directly, view it on GitHub https://github.com/BioinformaticsFMRP/TCGAbiolinks/issues/544#issuecomment-1251781290, or unsubscribe https://github.com/notifications/unsubscribe-auth/ACIAGH7OR4O7SSDMNVHHASTV7ETG5ANCNFSM6AAAAAAQQQH63M. You are receiving this because you authored the thread.
This would be a great tool. Alas, most of the commands do not work as advertised in the vignettes.
E.g., here's an example from the vignette "TCGAbiolinks: Downloading and preparing files for analysis" (I had to set
workflow.type = "STAR - Counts"
, because the original didn't work).Which gives the following error
Another example, adapted from the vignettes
which gives the following error