search

BioinformaticsFMRP / TCGAbiolinks

TCGAbiolinks
http://bioconductor.org/packages/devel/bioc/vignettes/TCGAbiolinks/inst/doc/index.html
286 stars 109 forks source link

How do we identify the batch informations from the sample ID? #562

Open snijesh opened 1 year ago

snijesh commented 1 year ago

I have samples from TCGA-BRCA. How do we identify the batch info from the sample ID? my ids look as follows.

TCGA-LL-A73Y-01A-11R-A33A-13
TCGA-AO-A03U-01B-21R-A10I-13
TCGA-E9-A1NH-01A-11R-A14C-13
TCGA-BH-A1EY-01A-11R-A13P-13
TCGA-AO-A1KS-01A-11R-A13P-13
TCGA-B6-A0I6-01A-11R-A035-13
TCGA-E9-A229-01A-31R-A156-13
TCGA-D8-A27H-01A-11R-A16E-13
TCGA-A2-A0EM-01A-11R-A035-13
TCGA-E2-A1II-01A-11R-A143-13
TCGA-BH-A0H3-01A-11R-A12O-13
TCGA-E2-A1IL-01A-11R-A14C-13
TCGA-BH-A0GY-01A-11R-A057-13
TCGA-BH-A0DG-01A-21R-A12O-13
manwarA commented 1 year ago

Hi, it may not be very helpful, but you can try GenomicsDataCommon package, which might give you this kind of information: https://bioconductor.org/packages/release/bioc/manuals/GenomicDataCommons/man/GenomicDataCommons.pdf