Timeout of 60 seconds was reached while using GDCquery.

[pratyusha-code]

after i am executing this query, query_clin <- GDCquery(project = CancerProject, file.type = "xml",data.category = "Clinical")

this is the error i am getting, Preparing output

Warning messages: 1: In readBin(3L, raw(0), 32768L) : URL 'https://api.gdc.cancer.gov/files/?pretty=true&expand=cases,cases.project,center,analysis&size=2288&filters=%7B%22op%22:%22and%22,%22content%22:[%7B%22op%22:%22in%22,%22content%22:%7B%22field%22:%22cases.project.project_id%22,%22value%22:[%22TCGA-BRCA%22]%7D%7D,%7B%22op%22:%22in%22,%22content%22:%7B%22field%22:%22files.data_category%22,%22value%22:[%22Clinical%22]%7D%7D]%7D&format=JSON': Timeout of 60 seconds was reached 2: In readBin(3L, raw(0), 32768L) : URL 'https://api.gdc.cancer.gov/files/?pretty=true&expand=cases,cases.project,center,analysis&size=2288&filters=%7B%22op%22:%22and%22,%22content%22:[%7B%22op%22:%22in%22,%22content%22:%7B%22field%22:%22cases.project.project_id%22,%22value%22:[%22TCGA-BRCA%22]%7D%7D,%7B%22op%22:%22in%22,%22content%22:%7B%22field%22:%22files.data_category%22,%22value%22:[%22Clinical%22]%7D%7D]%7D&format=JSON': Timeout of 60 seconds was reached 3: In readBin(3L, raw(0), 32768L) : URL 'https://api.gdc.cancer.gov/files/?pretty=true&expand=cases,cases.project,center,analysis&size=2288&filters=%7B%22op%22:%22and%22,%22content%22:[%7B%22op%22:%22in%22,%22content%22:%7B%22field%22:%22cases.project.project_id%22,%22value%22:[%22TCGA-BRCA%22]%7D%7D,%7B%22op%22:%22in%22,%22content%22:%7B%22field%22:%22files.data_category%22,%22value%22:[%22Clinical%22]%7D%7D]%7D&format=JSON': Timeout of 60 seconds was reached

sessionInfo() R version 4.2.2 (2022-10-31 ucrt) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 10 x64 (build 19044)

Matrix products: default

locale: [1] LC_COLLATE=English_India.utf8 LC_CTYPE=English_India.utf8
[3] LC_MONETARY=English_India.utf8 LC_NUMERIC=C
[5] LC_TIME=English_India.utf8

attached base packages: [1] stats4 stats graphics grDevices utils datasets methods
[8] base

other attached packages: [1] TCGAbiolinks_2.26.0 CancerSubtypes_1.24.0
[3] NMF_0.25 cluster_2.1.4
[5] rngtools_1.5.2 registry_0.5-1
[7] sigclust_1.1.0.1 SummarizedExperiment_1.28.0 [9] Biobase_2.58.0 GenomicRanges_1.50.2
[11] GenomeInfoDb_1.34.9 IRanges_2.32.0
[13] S4Vectors_0.36.1 BiocGenerics_0.44.0
[15] MatrixGenerics_1.10.0 matrixStats_0.63.0

loaded via a namespace (and not attached): [1] bitops_1.0-7 bit64_4.0.5
[3] filelock_1.0.2 doParallel_1.0.17
[5] RColorBrewer_1.1-3 progress_1.2.2
[7] httr_1.4.4 tools_4.2.2
[9] utf8_1.2.2 R6_2.5.1
[11] DBI_1.1.3 colorspace_2.1-0
[13] withr_2.5.0 tidyselect_1.2.0
[15] prettyunits_1.1.1 bit_4.0.5
[17] curl_5.0.0 compiler_4.2.2
[19] rvest_1.0.3 cli_3.6.0
[21] xml2_1.3.3 DelayedArray_0.23.2
[23] scales_1.2.1 readr_2.1.3
[25] rappdirs_0.3.3 stringr_1.5.0
[27] digest_0.6.31 XVector_0.38.0
[29] pkgconfig_2.0.3 dbplyr_2.3.0
[31] fastmap_1.1.0 limma_3.54.1
[33] rlang_1.0.6 rstudioapi_0.14
[35] RSQLite_2.2.20 impute_1.72.3
[37] generics_0.1.3 jsonlite_1.8.4
[39] dplyr_1.1.0 RCurl_1.98-1.10
[41] magrittr_2.0.3 GenomeInfoDbData_1.2.9
[43] Matrix_1.5-1 Rcpp_1.0.10
[45] munsell_0.5.0 fansi_1.0.4
[47] lifecycle_1.0.3 stringi_1.7.12
[49] zlibbioc_1.44.0 plyr_1.8.8
[51] BiocFileCache_2.6.0 grid_4.2.2
[53] blob_1.2.3 parallel_4.2.2
[55] crayon_1.5.2 lattice_0.20-45
[57] Biostrings_2.66.0 splines_4.2.2
[59] hms_1.1.2 KEGGREST_1.38.0
[61] knitr_1.42 pillar_1.8.1
[63] TCGAbiolinksGUI.data_1.18.0 reshape2_1.4.4
[65] codetools_0.2-18 biomaRt_2.54.0
[67] XML_3.99-0.13 glue_1.6.2
[69] downloader_0.4 data.table_1.14.6
[71] BiocManager_1.30.19 png_0.1-8
[73] vctrs_0.5.2 tzdb_0.3.0
[75] foreach_1.5.2 tidyr_1.3.0
[77] purrr_1.0.1 gtable_0.3.1
[79] assertthat_0.2.1 cachem_1.0.6
[81] ggplot2_3.4.0 xfun_0.36
[83] gridBase_0.4-7 ConsensusClusterPlus_1.62.0 [85] survival_3.4-0 tibble_3.1.8
[87] iterators_1.0.14 AnnotationDbi_1.60.0
[89] memoise_2.0.1 ellipsis_0.3.2

packageVersion("TCGAbiolinks") [1] ‘2.26.0’

how to fix this issue?