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BioinformaticsFMRP / TCGAbiolinks

TCGAbiolinks
http://bioconductor.org/packages/devel/bioc/vignettes/TCGAbiolinks/inst/doc/index.html
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error with GDCdownload function #566

Open pratyusha-code opened 1 year ago

pratyusha-code commented 1 year ago

fe3c72cf-3096-4b73-9975-8df899d4398d/nationwidechildrens.org_omf.TCGA-A8-A09E.xml: Can't create '\\?\D:\fe3c72cf-3096-4b73-9975-8df899d4398d\nationwidechildrens.org_omf.TCGA-A8-A09E.xml' tar.exe: Error exit delayed from previous errors. Download completed

here all the files are not getting downloaded and hence when i run this next query this error is showed

clinical <- GDCprepare_clinic(queryDown_clin,clinical.info = "patient") Error in GDCprepare_clinic(queryDown_clin, clinical.info = "patient") : I couldn't find all the files from the query.Please check directory parameter right

How to fix these 2 errors?

Wangxin555 commented 1 year ago

I have the same issue, could any developer give a solution to this?