Open Nshriwash opened 1 year ago
I ran the following code to download TARGET-AML dataset :
query.exp <- GDCquery( project = "TARGET-AML", data.category = "Transcriptome Profiling", data.type = 'Gene Expression Quantification', workflow.type = "STAR - Counts" )
query.exp$results[[1]] <- query.exp$results[[1]][!duplicated(query.exp$results[[1]]$cases),]
GDCdownload(query.exp) se <- GDCprepare( query.exp)
I got the error: => Add clinical information to samples Error in .rowNamesDF<-(x, value = value) : invalid 'row.names' length
How to solve this problem? I am using TCGAbiolinks version 2.27.2 and R version 4.3
I ran the following code to download TARGET-AML dataset :
query.exp <- GDCquery( project = "TARGET-AML", data.category = "Transcriptome Profiling", data.type = 'Gene Expression Quantification', workflow.type = "STAR - Counts" )
remove duplicated
query.exp$results[[1]] <- query.exp$results[[1]][!duplicated(query.exp$results[[1]]$cases),]
GDCdownload(query.exp) se <- GDCprepare( query.exp)
I got the error: => Add clinical information to samples Error in .rowNamesDF<-(x, value = value) : invalid 'row.names' length
How to solve this problem? I am using TCGAbiolinks version 2.27.2 and R version 4.3