TCGAbiolinks：rror in GDCquery(project = project, data.category = "Clinical", file.type = "xml")

[woshizlui]

When using TCGAbiolinks, an error message "Error in GDCquery(project = project, data.category = "Clinical", file.type = "xml") : unused argument (file.type = "xml")" occurs. I don't know how to handle this problem.

[tiagochst]

We had to make some changes after the legacy database was removed.

Please, use data.format instead of file.type

data.format = "bcr xml"

The documentation is updated in Bioconductor: https://bioconductor.org/packages/release/bioc/vignettes/TCGAbiolinks/inst/doc/clinical.html

On Thu, Jul 6, 2023 at 12:01 AM woshizlui @.***> wrote:

When using TCGAbiolinks, an error message "Error in GDCquery(project = project, data.category = "Clinical", file.type = "xml") : unused argument (file.type = "xml")" occurs. I don't know how to handle this problem.

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