Creating a SummarizedExperiment from DNA methylation input
Accessing DNAm annotation from sesame package for: hg38 - HM450
Cannot connect to ExperimentHub server, using 'localHub=TRUE' instead
Using 'localHub=TRUE'
If offline, please also see BiocManager vignette section on offline use
Error in .updateHubDB(hub_bfc, .class, url, proxy, localHub) :
Invalid Cache: sqlite file
Hub has not been added to cache
Run again with 'localHub=FALSE'
GDCdownload( query = query.met, files.per.chunk = 20, directory = "case3/GDCdata" ) acc.met <- GDCprepare( query = query.met, save = FALSE, directory = "case3/GDCdata", )
Creating a SummarizedExperiment from DNA methylation input Accessing DNAm annotation from sesame package for: hg38 - HM450 Cannot connect to ExperimentHub server, using 'localHub=TRUE' instead Using 'localHub=TRUE' If offline, please also see BiocManager vignette section on offline use Error in .updateHubDB(hub_bfc, .class, url, proxy, localHub) : Invalid Cache: sqlite file Hub has not been added to cache Run again with 'localHub=FALSE'