BioinformaticsFMRP / TCGAbiolinks

TCGAbiolinks
http://bioconductor.org/packages/devel/bioc/vignettes/TCGAbiolinks/inst/doc/index.html
284 stars 109 forks source link

Test suite issue on armel, armhf and ppc64el architecture #612

Open tillea opened 6 months ago

tillea commented 6 months ago

Hi, the Debian paackaged TCGAbiolinks is tested on different release architectures. While the test suite is passing on some architectures there is a failure which occures on armel, armhf and ppc64el architecture (the links are pointing to the according full build logs. Here is the actual error:

══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-analyse.R:153:9'): Results of TCGAanalyze_DEA inverting groups changes signal and order of the signals are right ──
dataDEGs$logFC not equal to -1 * dataDEGs.inv$logFC.
8/15396 mismatches (average diff: 0.852)
[7378]  -0.634 -  0.638 == -1.272
[7379]   0.638 - -0.634 ==  1.272
[9519]   0.429 - -0.429 ==  0.858
[9520]  -0.429 -  0.429 == -0.858
[10555] -0.355 -  0.365 == -0.720
[10556]  0.365 - -0.355 ==  0.720
[11525]  0.279 - -0.279 ==  0.558
[11526] -0.279 -  0.279 == -0.558

[ FAIL 1 | WARN 0 | SKIP 23 | PASS 24 ]

Kind regards, Andreas.